 Research Article
 Open access
 Published:
Largescale phase retrieval
eLight volumeÂ 1, ArticleÂ number:Â 4 (2021)
Abstract
Highthroughput computational imaging requires efficient processing algorithms to retrieve multidimensional and multiscale information. In computational phase imaging, phase retrieval (PR) is required to reconstruct both amplitude and phase in complex space from intensityonly measurements. The existing PR algorithms suffer from the tradeoff among low computational complexity, robustness to measurement noise and strong generalization on different modalities. In this work, we report an efficient largescale phase retrieval technique termed as LPR. It extends the plugandplay generalizedalternatingprojection framework from real space to nonlinear complex space. The alternating projection solver and enhancing neural network are respectively derived to tackle the measurement formation and statistical prior regularization. This framework compensates the shortcomings of each operator, so as to realize highfidelity phase retrieval with low computational complexity and strong generalization. We applied the technique for a series of computational phase imaging modalities including coherent diffraction imaging, coded diffraction pattern imaging, and Fourier ptychographic microscopy. Extensive simulations and experiments validate that the technique outperforms the existing PR algorithms with as much as 17dB enhancement on signaltonoise ratio, and more than one orderofmagnitude increased running efficiency. Besides, we for the first time demonstrate ultralargescale phase retrieval at the 8K level (\(7680\times 4320\) pixels) in minutelevel time.
1 Introduction
Wide field of view and high resolution are both desirable for various imaging applications, such as medical imaging [1,2,3,4] and remote sensing [5], providing multidimensional and multiscale target information. As the recent development of computational imaging, largescale detection has been widely employed in a variety of computational imaging modalities [3, 4, 6, 7]. These computational imaging techniques largely extend the spatialbandwidth product (SBP) [8] of optical systems from million scale to billion scale. As an example, the SBP of the realtime, ultralargescale, highresolution (RUSH) platform [4] and the Fourier ptychographic microscopy (FPM) [3] have reached to as high as 10^{8}â€“10^{9}. Such a large amount of data poses a great challenge for post software processing. Therefore, largescale processing algorithms with low computational complexity and high fidelity are of great significance for those imaging and perception applications in various dimensions [9].
In computational phase imaging, phase retrieval (PR) is required to reconstruct both amplitude and phase in complex space from intensityonly measurements. This problem originates from the limitation of the low response speed of photodetectors that impedes direct acquisition of light wavefront. Mathematically, the underlying goal of PR is to estimate an unknown complexfield signal from the intensityonly measurements of its complexvalued transformation, which is described as
where u is the underlying signal to be recovered \(\left( u \in {\mathbb {C}}^{n \times 1}\right)\), I contains the intensityonly measurements \(\left( I \in {\mathbb {R}}^{m \times 1}\right)\), \({\varvec{A}}\) represents measurement matrix \(\left( {\varvec{A}} \in {\mathbb {R}}^{m \times n} \text{ or } {\mathbb {C}}^{m \times n}\right)\), and \(\omega\) stands for measurement noise. Phase retrieval has been widely applied in plenty fields such as astronomy, crystallography, electron microscopy and optics [10]. It solves various nonlinear inverse problems in optical imaging, such as coherent diffraction imaging [11] (CDI), coded diffraction pattern imaging [12] (CDP), Fourier ptychographic microscopy [3] (FPM) and imaging through scattering medium [13].
In the past few decades, different phase retrieval algorithms have been developed. Gerchberg and Saxton pioneered the earliest alternating projection (AP) algorithm in the 1970s [14], which was then extended by Fienup et al. with several variants [15]. Due to its strong generalization ability, AP has been widely employed in multiple phase imaging models. Nevertheless, it is sensitive to measurement noise, suffering from poor noise robustness. Afterwards, researchers introduced optimization into PR, deriving a series of semidefinite programming (SDP) based algorithms [16, 17] and Wirtinger flow (WF) based algorithms [18,19,20]. These techniques enhance robustness to measurement noise, but they require high computational complexity and high sampling rate, making them inapplicable for largescale phase retrieval. Although the sparsity prior of natural images in transformed domains can be incorporated as an additional constraint to lower sampling rate [21, 22], it further increases computational complexity. Although these algorithms can theoretically employ patchwise [23] and parallel strategies to deal with largescale data, such a manner leads to a heavier load of memory requirement.
In the last few years, the booming deep learning (DL) technique has also been introduced for phase retrieval [24]. Following the largescale training framework, the DL strategy outperforms the above traditional PR techniques with higher fidelity. However, it provides poor generalization that each suits only for specific models, such as holography [24] and FPM [25]. For different models and even different system parameters, the deep neural network requires to be retrained with new largescale data sets. Recently, the prDeep technique [26] integrates iterative optimization and deep learning together, enabling to benefit from respective advantages. However, prDeep cannot recover complexdomain signals, leading to limited applications in practice. To sum, despite of different workflows, the above existing PR algorithms suffer from the tradeoff among low computational complexity, robustness to measurement noise and strong generalization, making them inapplicable for general largescale phase retrieval.
In this work, we report an efficient largescale phase retrieval technique termed as LPR, as sketched in Fig. 1. It builds on the plugandplay (PNP) [27] optimization framework, and extends the efficient generalizedalternatingprojection (GAP) [9, 28, 29] strategy from real space to nonlinear. The complexfield PNPGAP scheme ensures strong generalization of LPR on various imaging modalities, and outperforms the conventional firstorder PNP techniques (such as ADMM [27], ISTA [30] and FISTA [31] used in prDeep) with fewer auxiliary variables, lower computational complexity and faster convergence. As PNPGAP decomposes reconstruction into separate subproblems including measurement formation and statistical prior regularization [9, 32], we further introduce an alternating projection solver and an enhancing neural network respectively to solve the two subproblems. These two solvers compensate the shortcomings of each other, allowing the optimization to bypass the poor generalization of deep learning and poor noise robustness of AP. As a result, LPR enables generalized largescale phase retrieval with high fidelity and low computational complexity, making it a stateoftheart method for various computational phase imaging applications.
We compared LPR with the existing PR algorithms on extensive simulation and experiment of different imaging modalities. The results validate that compared to the AP based PR algorithms, LPR is robust to measurement noise with as much as 17dB enhancement on signaltonoise ratio. Compared with the optimization based PR algorithms, the running time is significantly reduced by more than one order of magnitude. Finally, we for the first time demonstrated ultralargescale phase retrieval at the 8K level (\(7680 \times 4320\) pixels) in minutelevel time, where most of the other PR algorithms failed due to unacceptable high computational complexity.
2 Results
We applied LPR and the existing PR algorithms on both simulation and experiment data of three computational phase imaging modalities including CDI, CDP and FPM, to investigate respective pros and cons. The competing algorithms for comparison includes the alternating projection technique (AP) [14, 15], the SDP based techniques (PhaseMax (PMAX) [33], PhaseLift (PLIFT) [16], PhaseLamp (PLAMP) [34]), the Wirtinger flow based techniques (Wirtinger Flow (WF) [18], Reweighted Wirtinger Flow (RWF) [35]), the amplitude flow based techniques [36, 37] (AmpFlow (AF), Truncated AmpFlow (TAF), Reweighted AmpFlow (RAF)), Coordinate Descent (CD) [38], KACzmarz (KAC) [39], prDeep [26] and the deep learning technique (DL) [24]. Most of these algorithms parameters were tuned based on the Phasepack [40] to achieve best performance. The convergence is determined when the intensity difference of reconstructed image between two successive iterations is smaller than a preset threshold. We employed the peak signaltonoise ratio (PSNR), structural similarity index (SSIM) [41] and root mean squared error (RMSE) to quantify reconstruction quality. All the calculation was tested on a desktop PC with an Intel i79700 CPU, 16G RAM and an Nvidia GTX 1660s GPU.
2.1 Coherent diffraction imaging
CDI is a representative noninterferometric phase imaging technique, and has been widely applied in physics, chemistry and biology due to its simple setup [10]. It illuminates a target using coherent plane waves, and records the intensity of the farfield diffraction pattern. By oversampling the diffracted light field and applying phase retrieval, both the targetâ€™s amplitude and phase information can be reconstructed. Mathematically, the measurement formation of CDI is
where u denotes the target information, and \({\mathcal {F}}\) represents the Fourier transformation that approximates the farfield diffraction.
Following the above formation model, we employed a highresolution image (\(1356 \times 2040\) pixels) from the DIV2K [42] dataset and an onion cell image [43] as the latent realdomain signals to synthesize two groups of CDI measurements. Because the prDeep technique for comparison is only applicable in real domain [26], we did not introduce phase into the latent signals. Due to the uniqueness guarantee of the solution, CDI requires at least 4 times oversampling in the Fourier domain [44]. Correspondingly, we padded zeros around the image matrix to generate a \(2712 \times 4080\) image. We implemented Fourier transform to the image and retained only its intensity as measurements. Additionally, to investigate the techniquesâ€™ robustness to measurement noise, we further added different levels of white Gaussian noise (WGN) to the measurements.
Table 1 presents the quantitative reconstruction evaluation of different techniques. The results show that the CD and KAC methods failed with no convergence. This is because these techniques require higher sampling ratio. The PLIFT and PLAMP methods do not work as well, because they require matrix lifting and involve a higher dimensional matrix that is out of memory in largescale reconstruction (Additional file 1: Fig. S1 shows the memory requirements of different algorithms under different image sizes). The other methods except for prDeep obtain little improvement compared to the AP algorithm. Specifically, the WF, AF and PMAX methods even degrade due to limited sampling ratio and noise corruption. The reconstruction of prDeep is better than the conventional algorithms, but with only 2dB enhancement on PSNR, and almost no SSIM improvement compared to AP. In contrast, LPR produces significant enhancement on reconstruction quality, with as much as 6dB and 0.29 improvement on PSNR and SSIM, respectively. Due to limited space, the results of another set of simulation is presented in Additional file 1: Table S1 and Figs. S2 and S3, which coincides with the above quantitative results.
Table 1 also presents the running time of these techniques. Because all the other algorithms used the result of AP as initialization, we recorded the excess time as the running time of these algorithms. From the results, we can see that prDeep consumes the most running time. LPR takes the same level of running time compared to the conventional algorithms, but with significantly improved reconstruction quality.
We further compared these algorithms on experiment CDI data [45], to validate their effectiveness in practical applications. The imaging sample is live glioblastoma cell line U87 MG. The setup includes a HeNe laser (543nm 5mW), a dual pinhole aperture that consists of two 100 m pinholes spaced 100 m apart from edge to edge, a 35 mm objective lens and a CCD camera (\(1340 \times 1300,\) 16 bits). Although the situ CDI modality used dualpinhole illumination that is slightly different from the standard CDI, its reconstruction is still a phase retrieval task in essence. The sequential measurements contain farfield diffraction patterns of several moments in the cell fusion process. Because the conventional algorithms obtain little improvement compared to AP and prDeep is not applicable for complexfield samples [26], we only present the reconstruction results of AP and LPR in Fig. 2. The results show that there exist serious noise artifacts in AP reconstruction, especially in the amplitude images. The cells are almost submerged by background noise at 0 and 135 min, and the contours and edges of cells can not be clearly observed. In comparison, LPR produces highfidelity results that effectively preserve fine details while attenuating measurement noise. The complete results of all the 48 moments are shown in Additional file 1: Figs. S4, S5, S6 and S7.
2.2 Coded diffraction pattern imaging
CDP [12] is a coded version of CDI, which introduces wavefront modulation to increase observation diversity. The strategy of multiple modulations and acquisitions enables to effectively bypass the oversampling limitation of the conventional CDI. Generally, the target light field is additionally modulated by a spatial light modulator (SLM), and the measurements after farfield Fraunhofer diffraction can be modeled as
where d represents the modulation pattern, and \(\odot\) denotes the Hadamard product.
We simulated CDP measurements with five and single phase modulations, respectively. The modulation patterns d are subject to Gaussian distribution [12]. We employed the same image as CDI to be the groundtruth signal (real domain), and added various levels of WGN to the measurements. Table 2 presents the quantitative evaluation of different techniques under the CDP modality (5 modulations). The results show that the Wirtinger flow based techniques (WF and RWF) failed because of insufficient measurements [18]. The PLIFT and PLAMP methods are still out of memory. The other conventional methods produce either little improvement or even worse reconstruction compared to AP. Although prDeep outperforms AP, it consumes around triple running time with high computational complexity. In comparison, the reported LPR obtains the best reconstruction performance, with as much as 8.3dB on PSNR and 0.61 on SSIM. Besides, it also shares the same level of running time as AP, which maintains the highest efficiency among all the algorithms. The detailed visual comparison of different methods is presented in Additional file 1: Fig. S8.
To further demonstrate the strong reconstruction performance of LPR, we also compared these algorithms in the case of aÂ limited sampling ratio with only single modulation, as shown in Table 3 and Fig. 3. Due to extremely insufficient measurements, most of the methods failed with either no convergence or poor reconstruction quality. Under heavy measurement noise, the target information is either buried or smoothed. In contrast, the reported LPR technique enables as much as 17dB enhancement on PSNR and 0.8 improvement on SSIM. As validated by the closeups in Fig. 3, LPR is able to retrieve fine details, even in the case of heavy measurement noise. Meantime, it is effective to attenuate noise and artifacts, producing smooth background.
In order to further illustrate the computational complexity of different techniques, we show the computation time as a function of image size in Additional file 1: Fig. S9 . We can see that as the image size increases, LPR obtains a lower computational complexity than prDeep.
2.3 Fourier ptychographic microscopy
FPM is a novel technique to increase optical systemâ€™s bandwidth for widefield and highresolution imaging. It illuminates the target with coherent light at different incident angles, and acquires corresponding images that contain information of different subregions of the targetâ€™s spatial spectrum. Mathematically, the measurement formation model of FPM is
where \({\mathcal {F}}^{1}\) is inverse Fourier transform, P denotes systemâ€™s pupil function, and \({\mathcal {S}}\) represents the wave function of incident light.
Following the formation model, we first implemented a simulation comparison with the following setup parameters: the wavelength is 625nm, the numerical aperture (NA) of objective lens is 0.08, the height from the light source to the target is 84.8mm, and the distance between adjacent light sources is 4mm. The pixel size of camera is \(3.4\mu \hbox {m}.\)Two microscopy images of blood cells [46] (\(2048 \times 2048\) pixels) were employed as the latent highresolution (HR) amplitude and phase, respectively. The size of captured lowresolution images (LR) was one fourth of the HR images.
Figure 4 presents the reconstruction results of AP [3], WF [47], deep learning (DL) [24] and LPR. For the DL technique, we used the result of the AP algorithm as the networkâ€™s input, and the network outputted the enhanced reconstruction results. In the training process, we used 20,000 images (10,000 each for amplitude and phase) from the PASCAL Visual Object Classes dataset [48] and DIV2K dataset [42], and trained the network individually for different noise levels. From the results, we can see that AP is sensitive to measurement noise. WF can better handle noise, but it requires high computational complexity and long running time (more than one order of magnitude). Although DL consumes the least inferring time and outperforms the AP and WF methods, its reconstruction quality is still worse than LPR in the presence of measurement noise. Compared with AP, LPR obtains as much as nearly 10dB enhancement on PSNR (SNR = 10). Besides, it consumes the same order of running time as AP. The visual comparison also validates that LPR enables highfidelity reconstruction of both amplitude and phase. Due to space limitation, we present the other two sets of simulation results in Additional file 1: Figs. S10 and S11.
We also implemented the algorithms on experiment FPM measurements. The imaging sample is a blood smear stained by HEMA 3 WrightGiemsa. The setup consists of a \(15 \times 15\) LED array, a 2\(\times\) 0.1 NA objective lens (Olympus), and a camera with \(1.85\mu \hbox {m}\) pixel size. The central wavelength of the LEDs is 632nm, and the lateral distance between adjacent LEDs is 4mm. The LED array is placed 80mm from the sample. We captured two sets of 225 LR images that correspond to the \(15 \times 15\) LEDs, respectively under 1ms and 0.25ms exposure time. The reconstructed results are presented in Fig. 5, which shows that AP is seriously degraded under limited exposure. Only the cell nucleus can be observed in amplitude, and other details are lost. LPR produces stateoftheart reconstruction performance. The measurement noise is effectively removed, and the cell structure and morphology details are clearly retrieved.
2.4 Ultralargescale phase retrieval
In ultralargescale imaging applications such as 4K (\(4096 \times 2160\) pixels) or 8K (\(7680 \times 4320\) pixels), most reconstruction algorithms are not applicable due to either highly large memory requirement or extremely long running time. Nevertheless, the reported LPR technique still works well in such applications. As a demonstration, we implemented a simulation of 8Klevel CDP (5 modulations), using an 8K outer space color image as the realdomain ground truth (released by NASA using the Hubble Telescope). Its spatial resolution is \(7680 \times 4320\) (each color channel) with in total 33.1 million pixels. We simulated intensityonly measurements individually for different RGB channels, and the reconstruction was also implemented separately for different channels. Figure 6 presents the reconstruction results of AP and LPR, with the input SNR being 5dB. The closeups show that the result of AP is drowned out by measurement noise, leading to dimness and loss of target details. In comparison, LPR outperforms a lot with strong robustness. Both their running times lie in the minute level. Another set of 8K reconstruction results is shown in Additional file 1: Fig. S12).
3 Methods
Following optimization theory, the phase retrieval task can be modeled as
where u denotes the target complex field to be recovered, f(u) is a datafidelity term that ensures consistency between the reconstructed result and measurements, and g(u) is a regularizer that imposes certain statistical prior knowledge. Conventionally, Eq. (5) is solved following the firstorder proximal gradient methods, such as ISTA and ADMM that are timeconsuming to calculate gradients in largescale nonlinear tasks [32]. In this work, instead, we employ the efficient generalizedalternatingprojection (GAP) strategy [32] to transform Eq. (5) with fewer variables to
where v is an auxiliary variable balancing the data fidelity term and prior regularization, A denotes measurement matrix, and I represents measurement. The difference between the conventional ADMM and GAP optimization is the constraint on the measurement [32]. ADMM minimizes \(\left\ IA u^{2}\right\\), while GAP imposes the constraint \(I=A u^{2}\).
To tackle the largescale phase retrieval task, we extend the efficient plugandplay (PNP) optimization framework [27] from real space to nonlinear complex space. Fundamentally, PNP decomposes optimization into two separate subproblems including measurement formation and prior regularization, so as to incorporating inverse recovery solvers together with various image enhancing solvers to improve reconstruction accuracy, providing high flexibility for different applications. Mathematically, Eq. (6) is decomposed into the following two subproblems, to alternatively update the two variables u and v.

Updating u: given \(v^{(k)}\), \(u^{(k+1)}\) is updated via a Euclidean projection of \(v^{(k)}\) on the manifold \(I=A u^{2}\) as
$$\begin{aligned} u^{k+1}=v^{(k)}+\lambda \cdot PR\left( IA v^{2}\right) , \end{aligned}$$(7)where PR is phase retrieval solver. Considering its great generalization ability on various imaging modalities and low computational complexity, we employ the AP method as the PR solver. It alternates between the target and observation planes allowing to incorporate any information available for the variables, providing low sampling rate requirement.

Updating v: given \(u^{(k+1)}\), \(v^{(k+1)}\) is updated by an image enhancing solver EN as
$$\begin{aligned} v^{k+1}=E N\left( u^{k+1}\right) . \end{aligned}$$(8)Although the iterative image enhancing research has made great progress in recent years with such as nonlocal optimization and dictionary learning [49], they maintain high computational complexity for largescale reconstruction [50]. In this work, considering its stateoftheart enhancement performance and flexibility to tackle different noise levels, we employed the deep learning based FFDNET [51] to deal with the subproblem with high fidelity and selfadaptation. The neural network consists of a series of \(3 \times 3\) convolution layers. Each layer is composed of a specific combination of three types of operations including convolution, rectified linear units and batch normalization. The architecture provides a balanced tradeoff between noise suppression and detail fidelity. While an image is input into the network, it is first down sampled into several subblocks, which then flow through the network for quality enhancement. Finally, these optimized blocks are stitched together to the original size. Such a workflow enables its great generalization ability on different image sizes.
After initialization, the variables are updated alternatively following Eqs. (7) and (8). When the intensity difference of theÂ reconstructed image between two successive iterations is smaller than a given threshold, the iteration stops with convergence. Since both the two solvers PR and EN are highly efficient and flexible, the entire reconstruction maintains low computational complexity and great generalization. The complete LPR algorithm is summarized in Algorithm 1 (Additional file 1), and the demo code has been released at https://github.com/bianlab/bianlab.github.io.
4 Conclusion and discussion
In this work, we engaged to tackle the largescale phase retrieval problem, and reported a generalized LPR optimization technique with low computational complexity and strong robustness. It extends the efficient PNPGAP framework from real space to nonlinear complex space, and incorporates the alternating projection solver and enhancing neural network. As validated by extensive simulations and experiments on three different computational phase imaging modalities (CDI, CDP and FPM), LPR exhibits unique advantages in largescale phase retrieval tasks with high fidelity and efficiency.
The PNP framework has a theoretical guarantee of convergence for most realdomain tasks, such as denoising, deblurring [52, 53], etc. However, to the best of our knowledge, there is no theoretical proof of PNPâ€™s convergence in the complex domain. Further, there is also no theoretical guarantee of convergence for the alternating projection solver that has been widely used for \(\sim\)50 years [10]. Even though, the extensive experimental results of various imaging modalities in this work and other studies (e.g. Fourier ptychographic microscopy [3], coherent diffraction imaging [11], ptychography [54], and coded diffraction patterns [12]) have validated that the PNP framework and the alternatingprojection solver can successfully converge to a global minimum.
The LPR technique can be further extended. First, it involves multiple algorithm parameters that are currently adjusted manually. We can introduce the reinforcement learning technique [55] in our future work to automatically adjust these parameters for best performance. Second, LPR is sensitive to initialization, especially under low sampling rate. The optimal spectral initialization [56] technique can be incorporated for stronger robustness. Third, the stagnation problem in blind ptychographic reconstruction [54] deserves further study under the reported framework. This enables to simultaneously recover both object and system parameters. Fourth, it is interesting to investigate the influence of employing other image enhancing solvers such as superresolution neural network, deblurring network and distortion removal network. This may open new insights for phase retrieval with further boosted quality.
Availability of data and materials
The datasets used and/or analysed during the current study are available from the corresponding author on reasonable request.
Change history
13 September 2021
Author Comment file (Authorâ€™s response to reviews) has been updated.
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Acknowledgements
The authors would like to thank anonymous reviewers for helpful and stimulating comments.
Funding
This work was supported by the National Natural Science Foundation of China (Nos. 61971045, 61827901, 61991451), National Key R&D Program (Grant No. 2020YFB0505601), Fundamental Research Funds for the Central Universities (Grant No. 3052019024).
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LB and XC conceived the idea and designed the experiments. XC conducted the simulations and experiments. All the authors contributed to writing and revising the manuscript, and convolved in discussions during the project. All authors read and approved the final manuscript.
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Supplementary Information
Additional file 1: Figure S1.
Â The relationship between memory requirement and image size under the CDI modality. Figure S2. Visual comparison under the CDI modality.Â Table S1. Quantitative comparison under the CDI modality (onion cell). Figure S3.Â Visual comparison under the CDI modality (onion cell).Â Figure S4.Â Experiment amplitude results of AP under the CDI modality. Figure S5. Experiment phase results of AP under the CDI modality.Â Figure S6. Experiment amplitude results of LPR under the CDI modality.Â Figure S7. Experiment phase results of LPR under the CDI modality.Â Figure S8. Visual comparison of simulation results under the CDP modality (5 modulations).Â Figure S9. The relationship between running time and image size under the CDP modality.Â Figure S10. Comparison of simulation results under the FPM modality.Â Figure S11. Comparison of largephaserange phase retrieval results under the FPM modality.Â Figure S12. Ultralargescale phase retrieval at the 8K level (7680Ã—4320 pixels).
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Chang, X., Bian, L. & Zhang, J. Largescale phase retrieval. eLight 1, 4 (2021). https://doi.org/10.1186/s4359302100004w
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DOI: https://doi.org/10.1186/s4359302100004w